PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00700.1.g00150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 148aa    MW: 17139.9 Da    PI: 10.0053
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00700.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF732.4e-231056248
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                                  rien   rqvtf+kRr g+lKKA ELS+LCd ++ vi+fs++gk+y+
  Zmw_sc00700.1.g00150.1.sm.mk 10 RIENPVHRQVTFCKRRMGLLKKARELSILCDGDIGVIVFSPHGKIYD 56
                                  8********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.273161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-26175IPR002100Transcription factor, MADS-box
CDDcd002655.73E-35273No hitNo description
PRINTSPR004043.2E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-221055IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KARELSILCD GDIGVIVFSP HGKIYDLATN  60
GNIRGLIERY RSTYTKGESS EQDKPQFKMQ IMSRELDMLR NKEGILKTAN DILQQRIIEQ  120
NGILDISGNV MMPQVPYQPA MESNYYFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975710.19e-70PREDICTED: MADS-box transcription factor 26-like
SwissprotA2YQK99e-46MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G89e-46MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A0E0P9N06e-74A0A0E0P9N0_ORYRU; Uncharacterized protein
STRINGSi012632m3e-69(Setaria italica)
STRINGBGIOSGA015021-PA2e-68(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112